Conjugate Bayes for probit regression via unified skew-normal distributions

Regression models for dichotomous data are ubiquitous in statistics. Besides being useful for inference on binary responses, these methods serve also as building blocks in more complex formulations, such as density regression, nonparametric classification and graphical models. Within the Bayesian framework, inference proceeds by updating the priors for the coefficients, typically set to be Gaussians, with the likelihood induced by probit or logit regressions for the responses. In this updating, the apparent absence of a tractable posterior has motivated a variety of computational methods, including Markov Chain Monte Carlo routines and algorithms which approximate the posterior. Despite being routinely implemented, Markov Chain Monte Carlo strategies face mixing or time-inefficiency issues in large p and small n studies, whereas approximate routines fail to capture the skewness typically observed in the posterior. This article proves that the posterior distribution for the probit coefficients has a unified skew-normal kernel, under Gaussian priors. Such a novel result allows efficient Bayesian inference for a wide class of applications, especially in large p and small-to-moderate n studies where state-of-the-art computational methods face notable issues. These advances are outlined in a genetic study, and further motivate the development of a wider class of conjugate priors for probit models along with methods to obtain independent and identically distributed samples from the unified skew-normal posterior

Conditionally conjugate mean-field variational Bayes for logistic models

Variational Bayes (VB) is a common strategy for approximate Bayesian inference, but simple methods are only available for specific classes of models including, in particular, representations having conditionally conjugate constructions within an exponential family. Models with logit components are an apparently notable exception to this class, due to the absence of conjugacy between the logistic likelihood and the Gaussian priors for the coefficients in the linear predictor. To facilitate approximate inference within this widely used class of models, Jaakkola and Jordan (2000) proposed a simple variational approach which relies on a family of tangent quadratic lower bounds of logistic log-likelihoods, thus restoring conjugacy between these approximate bounds and the Gaussian priors. This strategy is still implemented successfully, but less attempts have been made to formally understand the reasons underlying its excellent performance. To cover this key gap, we provide a formal connection between the above bound and a recent P\'olya-gamma data augmentation for logistic regression. Such a result places the computational methods associated with the aforementioned bounds within the framework of variational inference for conditionally conjugate exponential family models, thereby allowing recent advances for this class to be inherited also by the methods relying on Jaakkola and Jordan (2000)

Bayesian dynamic financial networks with time-varying predictors

We propose a Bayesian nonparametric model including time-varying predictors in dynamic network inference. The model is applied to infer the dependence structure among financial markets during the global financial crisis, estimating effects of verbal and material cooperation efforts. We interestingly learn contagion effects, with increasing influence of verbal relations during the financial crisis and opposite results during the United States housing bubble

Nonparametric Bayes dynamic modeling of relational data

Symmetric binary matrices representing relations among entities are commonly collected in many areas. Our focus is on dynamically evolving binary relational matrices, with interest being in inference on the relationship structure and prediction. We propose a nonparametric Bayesian dynamic model, which reduces dimensionality in characterizing the binary matrix through a lower-dimensional latent space representation, with the latent coordinates evolving in continuous time via Gaussian processes. By using a logistic mapping function from the probability matrix space to the latent relational space, we obtain a flexible and computational tractable formulation. Employing P\`olya-Gamma data augmentation, an efficient Gibbs sampler is developed for posterior computation, with the dimension of the latent space automatically inferred. We provide some theoretical results on flexibility of the model, and illustrate performance via simulation experiments. We also consider an application to co-movements in world financial markets

Locally Adaptive Dynamic Networks

Our focus is on realistically modeling and forecasting dynamic networks of face-to-face contacts among individuals. Important aspects of such data that lead to problems with current methods include the tendency of the contacts to move between periods of slow and rapid changes, and the dynamic heterogeneity in the actors' connectivity behaviors. Motivated by this application, we develop a novel method for Locally Adaptive DYnamic (LADY) network inference. The proposed model relies on a dynamic latent space representation in which each actor's position evolves in time via stochastic differential equations. Using a state space representation for these stochastic processes and P\'olya-gamma data augmentation, we develop an efficient MCMC algorithm for posterior inference along with tractable procedures for online updating and forecasting of future networks. We evaluate performance in simulation studies, and consider an application to face-to-face contacts among individuals in a primary school

The Compass for Statistical Researchers

We have hiked many miles alongside several professors as we traversed our statistical path -- a regime switching trail which changed direction following a class on the foundations of our discipline. As we play the game of research in that limbo between student and academic, one thing among Prof. Bernardi's teachings has never been more clear: to draw a route in the research map you not only need to know your destination, but you must also understand where you are and how you arrived there

A nested expectation-maximization algorithm for latent class models with covariates

We develop a nested EM routine for latent class models with covariates which allows maximization of the full-model log-likelihood and, differently from current methods, guarantees monotone log-likelihood sequences along with improved convergence rates

Bayesian inference on group differences in multivariate categorical data

Multivariate categorical data are common in many fields. We are motivated by election polls studies assessing evidence of changes in voters opinions with their candidates preferences in the 2016 United States Presidential primaries or caucuses. Similar goals arise routinely in several applications, but current literature lacks a general methodology which combines flexibility, efficiency, and tractability in testing for group differences in multivariate categorical data at different---potentially complex---scales. We address this goal by leveraging a Bayesian representation which factorizes the joint probability mass function for the group variable and the multivariate categorical data as the product of the marginal probabilities for the groups, and the conditional probability mass function of the multivariate categorical data, given the group membership. To enhance flexibility, we define the conditional probability mass function of the multivariate categorical data via a group-dependent mixture of tensor factorizations, thus facilitating dimensionality reduction and borrowing of information, while providing tractable procedures for computation, and accurate tests assessing global and local group differences. We compare our methods with popular competitors, and discuss improved performance in simulations and in American election polls studies

The gravity fields of Jupiter and Saturn as determined by Juno and Cassini

This Doctoral Thesis reports on the analysis procedure for the data acquired by Juno and Cassini in the last year with the aim of determining, respectively, Jupiter and Saturn’s gravity fields. The radio science investigation exploits the Doppler shift of a microwave signal to precisely determine the Earth-Spacecraft radial velocity and to estimate the gravity field harmonic coefficients, along with other dynamical parameters. The basic concepts of Doppler data and orbit determination are reported. A discussion on the esti- mated gravity fields is presented, as well as the implications for the interior structure of the Solar System’s gas giants